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Picchetti T., Chiquet J., Elati M., Neuvial P., Nicolle R. and Birmelé E. (2015), A model for gene deregulation detection using expression data , BMC Systems Biology 2015, 9(Suppl 6):S6

Andrade R., Birmelé E., Mary A., Picchetti T. and Sagot M.-F. (2015), Incremental complexity of a bi-objective hypergraph transversal problem , Fundamentals of Computation Theory 2015, Lecture Notes in Computer Science 9210, 202-213.

Latouche, P., Birmelé, E., and Ambroise, C. (2014), Model selection in overlapping stochastic block models, Electronic Journal of Statistics, 8, 762-794.

Milreu, P., Coimbre Klein, C., Cottret, L., Acuna, V., Birmelé, E., Borassi, M., Junot, C., Marchetti-Spaccamela, A., Marino, A., Stougie, L., Jourdan, F., Crescenzi, P., Lacroix, V. and Sagot, M.-F. (2014), Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure , Bioinformatics 30 (1): 61-70

Birmelé, E., Ferreira, R., Grossi, R., Marino, A., Pisanti, N., Rizzi, R. and Sacomoto, G. (2013),
Optimal Listing of Cycles and st-Paths in Undirected Graphs , Proceedings of 24th ACM/SIAM Symposium On Discrete Algorithms (SODA) 2013, ACM Press

Birmelé, E. (2012), Detecting local network motifs, Electronic Journal of Statistics, 6, 908-933.

Acuna, V., Birmelé, E., Cottret, L., Crescenzi, P., Jourdan, F., Lacroix, V., Marchetti-Spaccamela, A., Marino, A., Vieira Milreu, P., Sagot, M.-F. and Stougie, L. (2012), Telling Stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets , Theoretical Computer Science, 457(2), 1-9.

Birmelé, E., Crescenzi, P., Ferreira, R., Grossi, R., Lacroix, V., Marino, A., Pisanti, N., Sacomoto, G. and Sagot, M.-F. (2012), Efficient bubble enumeration in directed graphs , String Processing and Information Retrieval (SPIRE) 2012, Lecture Notes in Computer Science.

Latouche, P., Birmelé, E., and Ambroise, C. (2012), Variational Bayesian inference and complexity control for stochastic block models , Statistical Modelling, 12(1), 93-115.

Latouche, P., Birmelé,E., and Ambroise, C. (2011), Overlapping stochastic block model with application to the french political blogosphere, Annals of Applied Statistics, 5(1), 309-336.

Birmelé, E., Delbot, F., Laforest, C. and Thibaut, N. (2011), Analyse du nombre de perturbations lors du maintien d'un arbre de connexion de faible diamètre,Techniques et Sciences Informatiques, 30(7), 781-808. (in french)

Milreu, P., Acuna, V., Birmelé, E., Crescenzi, P., Marchetti-Spaccamela, A., Sagot, M.-F., Stougie, L., and Lacroix, V. (2010), Enumerating chemical organisations in consistent metabolic networks: Complexity and algorithms, WABI'2010, 6293, 226-237.

Birmelé, E.,
A scale-free graph model based on bipartite graphs (2009). Discrete Applied Mathematics, 157(10), 2267-2284.

Birmelé, E., Delbot, F. and Laforest, C. (2009), Mean analysis of an online algorithm for the vertex cover problem , Information Processing Letters, 109, 436-439.

Birmelé,E., Bondy, J.A., and Reed, B.A. (2009). Tree-width of graphs without a 3 by 3 grid minor, Discrete Applied Mathematics, 157(12), 2577-2596.

Birmelé, E., Elati, M., Rouveirol, C., and Ambroise, C. (2008). Identification of functional modules based on transcriptional regulation structure, BMC Proceedings, 2(4):S4.

Birmelé, E. (2008). Every longest circuit of a 3-connected, $K_{3,3}$-minor free graph has a chord, J. Graph Theory, 58(4), 293-298..

Birmelé, E., Bondy, J.A., and Reed, B.A. (2007). The Erdos-Posa property for long circuits, Combinatorica, 27(2), 135-145.

Birmelé, E., Bondy, J.A., and Reed, B.A. (2007). Brambles, prisms and grids, Graph Theory in Paris - Proceedings of a Conference in Memory of Claude Berge, Birkhause.

Matias, C., Schbath, S., Birmelé, E., Daudin, J.-J., and Robin, S. (2006). Networks motifs: mean and variance for the count, Revstat, 4(1), 31-51.

Bessy, S., Birmelé, E., and Havet, F. (2006). Arc-chromatic number of digraphs in which every vertex has bounded outdegree or bounded indegree, J. Graph Theory, 53(4), 315-332.

Birmelé, E. (2003). Tree-width and circumference of graphs, J. Graph Theory, 43(1), 24-25